Package: rYWAASB 0.3

rYWAASB: Simultaneous Selection by Trait and WAASB Index

This tool proposes a new ranking algorithm that utilizes a "Y*WAASB" biplot generated by the 'metan'. The aim of the current package is to effectively distinguish the top-ranked genotypes in MET (Multi-Environmental Trials). For a detailed explanation of the process of obtaining "WAASB", "WAASBY" indices, and a "Y*WAASB" biplot, refer to the manual included in this package as well as the study by Olivoto & Lúcio (2020) <doi:10.1111/2041-210X.13384>. In this context, "WAASB" refers to the "Weighted Average of Absolute Scores" provided by Olivoto et al. (2019) <doi:10.2134/agronj2019.03.0220>, which quantifies the stability of genotypes across different environments using linear mixed-effect models. To run the package, you need to extract the "WAASB" and "WAASBY" coefficients using the 'metan' and apply them. This tool utilizes PCA (Principal Component Analysis) and differentiates the entries which may be genotypes, hybrids, varieties, etc using "WAASB", "WAASBY", and a combination of the specified trait and WAASB index.

Authors:Ali Arminian [aut, cre, cph]

rYWAASB_0.3.tar.gz
rYWAASB_0.3.zip(r-4.7)rYWAASB_0.3.zip(r-4.6)rYWAASB_0.3.zip(r-4.5)
rYWAASB_0.3.tgz(r-4.6-any)rYWAASB_0.3.tgz(r-4.5-any)
rYWAASB_0.3.tar.gz(r-4.7-any)rYWAASB_0.3.tar.gz(r-4.6-any)
rYWAASB_0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rYWAASB/json (API)
NEWS

# Install 'rYWAASB' in R:
install.packages('rYWAASB', repos = c('https://abeyrann.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/abeyran/rywaasb/issues

Datasets:
  • data_ge - Dataset3: a tibble containing ENV, GEN, REP factors and GY(grain yield) and HM agronomic traits from the 'metan' package.
  • dm - Dataset2: a tibble containing GEN, Trait (days to maturity), 'WAASB' and 'WAASBY' indexes.
  • maize - Dataset1: a tibble containing GEN, Trait(here grain yield), 'WAASB' and 'WAASBY' indexes.

On CRAN:

Conda:

2.70 score 6 scripts 156 downloads 5 exports 119 dependencies

Last updated from:b8778d0a42. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE161
source / vignettesOK266
linux-release-x86_64NOTE181
macos-release-arm64NOTE166
macos-oldrel-arm64NOTE172
windows-develNOTE100
windows-releaseNOTE98
windows-oldrelNOTE105
wasm-releaseOK153

Exports:bar_plot1bar_plot2nbclustPCA_biplotranki

Dependencies:abindbackportsbase64encbootbroombslibcachemcarcarDatacliclustercolorspacecorrplotcowplotcpp11crosstalkdendextendDerivdigestdoBydplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfarverfastmapflashClustfontawesomeforecastFormulafracdifffsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4lmtestmagrittrMASSmathjaxrMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamodelrmultcompViewmvtnormnlmenloptrnnetnumDerivotelpbkrtestpillarpkgconfigpolynompromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrmarkdownrstatixS7sassscalesscatterplot3dSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisviridisLitewithrxfunyamlzoo

Simultaneous Selection by Trait and WAASB Index

Ali Arminian

Rendered fromrYWAASB_manual.Rmdusingknitr::rmarkdownon May 27 2026.

Last update: 2025-05-23
Started: 2024-08-29