Package: rYWAASB 0.1

rYWAASB: Simultaneous Selection of Trait and WAASB Index

Proposes a new ranking algorithm that utilizes a "Y*WAASB" biplot generated from the 'metan' package. The aim of the package is to effectively distinguish the top-ranked genotypes. For a detailed explanation of the process of obtaining a "Y*WAASB" biplot and the related data, please refer to the manual included in this package as well as the study by Olivoto & LĂșcio (2020) <doi:10.1111/2041-210X.13384>. In this context, "WAASB" refers to the "Weighted Average of Absolute Scores" provided by Olivoto et al. (2019) <doi:10.2134/agronj2019.03.0220>, which quantifies the stability of genotypes across different environments using linear mixed-effect models. In order to run the package, it is necessary to extract the "WAASB" coefficients using the 'metan' package.

Authors:Ali Arminian [aut, cre, cph]

rYWAASB_0.1.tar.gz
rYWAASB_0.1.zip(r-4.5)rYWAASB_0.1.zip(r-4.4)rYWAASB_0.1.zip(r-4.3)
rYWAASB_0.1.tgz(r-4.4-any)rYWAASB_0.1.tgz(r-4.3-any)
rYWAASB_0.1.tar.gz(r-4.5-noble)rYWAASB_0.1.tar.gz(r-4.4-noble)
rYWAASB_0.1.tgz(r-4.4-emscripten)rYWAASB_0.1.tgz(r-4.3-emscripten)
rYWAASB.pdf |rYWAASB.html
rYWAASB/json (API)

# Install 'rYWAASB' in R:
install.packages('rYWAASB', repos = c('https://abeyrann.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/abeyran/stability1/issues

Datasets:
  • data_ge - Dataset2: a tibble containing ENV, GEN, REP variables and GY(grain yield) and HM traits from the metan package.
  • maize - Dataset1: a tibble containing GEN, Trait and WAASB index columns.

On CRAN:

3 exports 0.09 score 28 dependencies 6 scripts 8 downloads

Last updated 20 days agofrom:65d0c4f259. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 30 2024
R-4.5-winOKAug 30 2024
R-4.5-linuxOKAug 30 2024
R-4.4-winOKAug 30 2024
R-4.4-macOKAug 30 2024
R-4.3-winOKAug 30 2024
R-4.3-macOKAug 30 2024

Exports:bar_plot1bar_plot2ranki

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

rYWAASB-vignette

Rendered fromrYWAASB_manual.Rmdusingknitr::rmarkdownon Aug 30 2024.

Last update: 2024-08-29
Started: 2024-08-29