{ "_id": "6a10653dacfb0bcc41ca8adb", "Package": "Path.Analysis", "Type": "Package", "Title": "Path Coefficient Analysis", "Version": "0.1", "Date": "2024-9-12.", "Author": "Ali Arminian [aut, cre, cph]\n()", "Authors@R": "person(family=\"Arminian\", given =\"Ali\", email=\"abeyran@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0003-4749-6085\"))", "Maintainer": "Ali Arminian ", "Description": "Facilitates the performance of several analyses, including\nsimple and sequential path coefficient analysis, correlation\nestimate, drawing correlogram, Heatmap, and path diagram. When\nworking with raw data, that includes one or more dependent\nvariables along with one or more independent variables are\navailable, the path coefficient analysis can be conducted. It\nallows for testing direct effects, which can be a vital\nindicator in path coefficient analysis. The process of\npreparing the dataset rule is explained in detail in the\nvignette file \"Path.Analysis_manual.Rmd\". You can find this in\nthe folders labelled \"data\" and \"~/inst/extdata\". Also see:\n1)the 'lavaan', 2)a sample of sequential path analysis in\n'metan' suggested by Olivoto and Lúcio (2020)\n, 3)the simple 'PATHSAS' macro\nwritten in 'SAS' by Cramer et al. (1999)\n, and 4)the semPlot() function of\n'OpenMx' as initial tools for conducting path coefficient\nanalyses and SEM (Structural Equation Modeling). To gain a\ncomprehensive understanding of path coefficient analysis, both\nin theory and practice, see a 'Minitab' macro developed by\nArminian, A. in the paper by Arminian et al. (2008)\n.", "License": "GPL-3", "URL": "https://github.com/abeyran/Path.Analysis", "BugReports": "https://github.com/abeyran/Path.Analysis/issues", "VignetteBuilder": "knitr", "RdMacros": "mathjaxr", "Encoding": "UTF-8", "Copyright": "Ali Arminian", "RoxygenNote": "7.3.2", "Language": "en-US", "LazyData": "true", "LazyLoad": "true", "NeedsCompilation": "no", "BuildManual": "TRUE", "Packaged": { "Date": "2026-05-08 06:34:43 UTC", "User": "root" }, "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibglpk-dev make libicu-dev libpng-dev libuv1-dev libxml2-dev\nlibssl-dev perl libx11-dev", "Repository": "https://abeyrann.r-universe.dev", "Date/Publication": "2024-09-25 08:20:05 UTC", "RemoteUrl": "https://github.com/cran/Path.Analysis", "RemoteRef": "HEAD", "RemoteSha": "b0758c129ca6d72f8aca63a38db8974846980300", "MD5sum": "089f981985e21af08260c3abc0eb7063", "_user": "abeyrann", "_type": "src", "_file": "Path.Analysis_0.1.tar.gz", "_fileid": "0bc357a52412c4a024fc72befb9e0738447bec5764b98d97433dda2064907342", "_filesize": 800983, "_sha256": "0bc357a52412c4a024fc72befb9e0738447bec5764b98d97433dda2064907342", "_created": "2026-05-08T06:34:43.000Z", "_published": "2026-05-22T14:16:29.193Z", "_distro": "noble", "_jobs": [ { "job": 77397558140, "time": 226, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "6873348038" }, { "job": 77397558673, "time": 230, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "6873348917" }, { "job": 77397558688, "time": 224, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "6873335535" }, { "job": 77397558602, "time": 159, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "6873325533" }, { "job": 77397557774, "time": 247, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6873292221" }, { "job": 77397557712, "time": 172, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7162691528" }, { "job": 77397558046, "time": 128, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "6873322785" }, { "job": 77397558659, "time": 178, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "6873334597" }, { "job": 77397559296, "time": 130, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "6873323348" } ], "_buildurl": "https://github.com/r-universe/abeyrann/actions/runs/25540793796", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/Path.Analysis", "_commit": { "id": "b0758c129ca6d72f8aca63a38db8974846980300", "author": "Ali Arminian ", "committer": "cran-robot ", "message": "version 0.1\n", "time": 1727252405 }, "_maintainer": { "name": "Ali Arminian", "email": "abeyran@gmail.com", "login": "abeyrann", "uuid": 53426687, "orcid": "0000-0003-4749-6085" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "corrr", "role": "Imports" }, { "package": "corrplot", "role": "Imports" }, { "package": "Hmisc", "role": "Imports" }, { "package": "gplots", "role": "Imports" }, { "package": "mathjaxr", "role": "Imports" }, { "package": "pastecs", "role": "Imports" }, { "package": "graphics", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "DiagrammeR", "role": "Imports" }, { "package": "ComplexHeatmap", "role": "Imports" }, { "package": "metan", "role": "Imports" }, { "package": "car", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "devtools", "role": "Suggests" }, { "package": "usethis", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "abeyrann", "count": 1, "uuid": 53426687 } ], "_userbio": { "uuid": 53426687, "type": "user", "name": "Dr Ali Arminian", "description": "Plant Breeder" }, "_downloads": { "count": 239, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/Path.Analysis" }, "_devurl": "https://github.com/abeyran/path.analysis", "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/Path.Analysis.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_realowner": "abeyrann", "_cranurl": false, "_releases": [ { "version": "0.1", "date": "2024-09-25" } ], "_exports": [ "cor_plot", "corr", "dataprep", "desc", "heat_map", "matdiag", "network.plot", "reg" ], "_datasets": [ { "name": "dtraw", "title": "Dataset 2: a number of 9 traits measured on 35 Camelina DH lines.", "object": "dtraw", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "DH lines", "Y", "X1", "X2", "X3", "X4", "X5", "X6", "X7", "X8" ], "rows": 35, "table": true, "tojson": true }, { "name": "dtraw2", "title": "Dataset 3: a number of 9 traits measured on 35 Camelina DH lines.", "object": "dtraw2", "class": [ "data.frame" ], "fields": [ "Y", "X1", "X2", "X3", "X4", "X5", "X6", "X7", "X8" ], "rows": 35, "table": true, "tojson": true }, { "name": "dtseq", "title": "Dataset 4: a dataframe consisting of 7 variables measured on 8 observations.", "object": "dtseq", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "Genotypes", "YLD", "DFT", "FS", "FV", "FW", "DFL", "FLP" ], "rows": 8, "table": true, "tojson": true }, { "name": "dtseqr", "title": "Dataset5", "object": "dtseqr", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "Genotypes", "Rep", "YLD", "DFT", "FS", "FV", "FW", "DFL", "FLP" ], "rows": 24, "table": true, "tojson": true }, { "name": "dtsimp", "title": "Dataset 1: a dependent (y) and 3 independent(x1 to x3) variables.", "object": "dtsimp", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "y", "x1", "x2", "x3" ], "rows": 105, "table": true, "tojson": true }, { "name": "heart", "title": "Dataset 6: Heart Disease data set", "object": "heart", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "Biking", "Heart.disease", "Smoking" ], "rows": 498, "table": true, "tojson": true } ], "_help": [ { "page": "cor_plot", "title": "Drawing the correlogram", "topics": [ "cor_plot" ] }, { "page": "corr", "title": "Correlation Analysis", "topics": [ "corr" ] }, { "page": "dataprep", "title": "Data preparation", "topics": [ "dataprep" ] }, { "page": "desc", "title": "Descriptive statistics", "topics": [ "desc" ] }, { "page": "dtraw", "title": "Dataset 2: a number of 9 traits measured on 35 Camelina DH lines.", "topics": [ "dtraw" ] }, { "page": "dtraw2", "title": "Dataset 3: a number of 9 traits measured on 35 Camelina DH lines.", "topics": [ "dtraw2" ] }, { "page": "dtseq", "title": "Dataset 4: a dataframe consisting of 7 variables measured on 8 observations.", "topics": [ "dtseq" ] }, { "page": "dtseqr", "title": "Dataset5", "topics": [ "dtseqr" ] }, { "page": "dtsimp", "title": "Dataset 1: a dependent (y) and 3 independent(x1 to x3) variables.", "topics": [ "dtsimp" ] }, { "page": "heart", "title": "Dataset 6: Heart Disease data set", "topics": [ "heart" ] }, { "page": "heat_map", "title": "Creating the 'Heatmap' chart", "topics": [ "heat_map" ] }, { "page": "matdiag", "title": "Direct and Indirect Effects Matrices and Diagram", "topics": [ "matdiag" ] }, { "page": "network.plot", "title": "Network plot", "topics": [ "network.plot" ] }, { "page": "Path.Analysis", "title": "Path Coefficient Analysis", "topics": [ "Path.Analysis-package", "Path.Analysis" ] }, { "page": "reg", "title": "Multiple Linear Regression", "topics": [ "reg" ] } ], "_readme": "https://github.com/cran/Path.Analysis/raw/HEAD/README.md", "_rundeps": [ "backports", "base64enc", "BiocGenerics", "bit", "bit64", "bitops", "boot", "bslib", "ca", "cachem", "caTools", "checkmate", "circlize", "cli", "clipr", "clue", "cluster", "codetools", "colorspace", "ComplexHeatmap", "corrplot", "corrr", "cpp11", "crayon", "data.table", "DiagrammeR", "digest", "doParallel", "dplyr", "evaluate", "farver", "fastmap", "fontawesome", "forcats", "foreach", "foreign", "Formula", "fs", "gclus", "generics", "GetoptLong", "GGally", "ggforce", "ggplot2", "ggrepel", "ggstats", "GlobalOptions", "glue", "gplots", "gridExtra", "gtable", "gtools", "highr", "Hmisc", "hms", "htmlTable", "htmltools", "htmlwidgets", "igraph", "IRanges", "isoband", "iterators", "jquerylib", "jsonlite", "KernSmooth", "knitr", "labeling", "lattice", "lifecycle", "lme4", "lmerTest", "magrittr", "MASS", "mathjaxr", "Matrix", "matrixStats", "memoise", "metan", "mgcv", "mime", "minqa", "nlme", "nloptr", "nnet", "numDeriv", "pastecs", "patchwork", "permute", "pillar", "pkgconfig", "png", "polyclip", "prettyunits", "progress", "purrr", "qap", "R6", "rappdirs", "rbibutils", "RColorBrewer", "Rcpp", "RcppEigen", "Rdpack", "readr", "reformulas", "registry", "rjson", "rlang", "rmarkdown", "rpart", "rstudioapi", "S4Vectors", "S7", "sass", "scales", "seriation", "shape", "stringi", "stringr", "systemfonts", "tibble", "tidyr", "tidyselect", "tinytex", "TSP", "tweenr", "tzdb", "utf8", "vctrs", "vegan", "viridisLite", "visNetwork", "vroom", "withr", "xfun", "yaml" ], "_vignettes": [ { "source": "Path.Analysis_manual.Rmd", "filename": "Path.Analysis_manual.html", "title": "Path Coefficient Analysis", "author": "Ali Arminian", "engine": "knitr::rmarkdown", "headings": [ "1-Introduction", "", "2- The Path coefficient model", "One dependent variable:", "Extension to more dependent variables:", "2-1- Simple path coefficient analysis", "2-1-1- worked example 1:", "2-1-2- worked example 2:", "2-2- Sequential path coefficient analysis", "2-2-1- worked example:", "Attractive heatmaps", "References" ], "created": "2024-09-25 08:20:05", "modified": "2024-09-25 08:20:05", "commits": 1 } ], "_score": 2.6989700043360187, "_indexed": true, "_nocasepkg": "path.analysis", "_universes": [ "abeyrann", "abeyran" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1", "date": "2026-05-08T06:37:57.000Z", "distro": "noble", "commit": "b0758c129ca6d72f8aca63a38db8974846980300", "fileid": "d5c0c83703a8763fba025cb476867a8dd4a5ded11e157e2402b620f87e46079c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/abeyrann/actions/runs/25540793796" }, { "r": "4.6.0", "os": "linux", "version": "0.1", "date": "2026-05-08T06:38:08.000Z", "distro": "noble", "commit": "b0758c129ca6d72f8aca63a38db8974846980300", "fileid": "844cc235f45efecf8dffc5f27138b6a4ba9bfc8c11f81268f25da98ec1ded31b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/abeyrann/actions/runs/25540793796" }, { "r": "4.5.3", "os": "mac", "version": "0.1", "date": "2026-05-08T06:37:20.000Z", "commit": "b0758c129ca6d72f8aca63a38db8974846980300", "fileid": "549b511781b2e2fd72d8a310dedb04079c86f2ba28f9f2a4894159b88417409d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/abeyrann/actions/runs/25540793796" }, { "r": "4.6.0", "os": "mac", "version": "0.1", "date": "2026-05-08T06:36:48.000Z", "commit": "b0758c129ca6d72f8aca63a38db8974846980300", "fileid": "5660d5735d9f697c1fa5ca46fc993da12d7921d78cde99b72b4ae1ecd29f8d28", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/abeyrann/actions/runs/25540793796" }, { "r": "4.7.0", "os": "win", "version": "0.1", "date": "2026-05-08T06:36:13.000Z", "commit": "b0758c129ca6d72f8aca63a38db8974846980300", "fileid": "3411ef9e6a4162bdbeb065942ed4fd9dc17195b758f5def68a39cfef98376b94", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/abeyrann/actions/runs/25540793796" }, { "r": "4.5.3", "os": "win", "version": "0.1", "date": "2026-05-08T06:36:57.000Z", "commit": "b0758c129ca6d72f8aca63a38db8974846980300", "fileid": "99955051d35bacc9d649965fee3debd906a95bfdc1747f3f70214f4b3419bed4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/abeyrann/actions/runs/25540793796" }, { "r": "4.6.0", "os": "win", "version": "0.1", "date": "2026-05-08T06:36:11.000Z", "commit": "b0758c129ca6d72f8aca63a38db8974846980300", "fileid": "40f023b83470ff8d4e5fe29d49f6c52079252eda9b36662c4430c2324f2c0905", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/abeyrann/actions/runs/25540793796" }, { "r": "4.6.0", "os": "wasm", "version": "0.1", "date": "2026-05-22T14:16:06.000Z", "commit": "b0758c129ca6d72f8aca63a38db8974846980300", "fileid": "4fc0dec7593893de943e53346924929b09fcd6369f217e4b1692fd0e2306306d", "status": "success", "buildurl": "https://github.com/r-universe/abeyrann/actions/runs/25540793796" } ] }